Publications

Jeffrey W. Doser, Marc Kéry, Sarah P. Saunders, Andrew O. Finley, Brooke L. Bateman, Joanna Grand, Shannon Reault, Aaron S. Weed, Elise F. Zipkin (2023). Guidelines for the use of spatially-varying coefficients in species distribution models.

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Caleb P. Roberts, Jeffrey W. Doser, Lauren L. Berry, Allison Fowler, Percival M. Marshall, Christopher Middaugh, Karen Rowe, Jessican M. Schmit, Michael Shaw, Kenneth Wilson (2023). Scenario planning and multispecies occupancy models reveal positive avian responses to restoration of afforested woodlands. In: Restoration Ecology (2023) https://onlinelibrary.wiley.com/doi/abs/10.1111/rec.13998.

Jeffrey W. Doser, Andrew O. Finley, Sarah P. Saunders, Marc Kéry, Aaron S. Weed, Elise F. Zipkin (2023). Modeling complex species-environment relationships through spatially-varying coefficient occupancy models.

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Samuel Ayebare, Jeffrey W. Doser, Andrew J. Plumptre, Isaiah Owiunji, Hamlet Mugabe, Elise F. Zipkin (2023). An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species. In: Proceedings of the Royla Society B (2023) https://royalsocietypublishing.org/doi/full/10.1098/rspb.2023.0467.

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Jeffrey W. Doser, Andrew O. Finley, Sudipto Banerjee (2023). Joint species distribution models with imperfect detection for high-dimensional spatial data. In: Ecology (2023) https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.4137.

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Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin (2022). spOccupancy: An R package for fitting single-species, multi-species, and integrated spatial occupancy models. In: Methods in Ecology and Evolution (2022) https://doi.org/10.1111/2041-210X.13897.

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Jeffrey W. Doser, Wendy Leuenberger, T. Scott Sillett, Michael T. Hallworth, Elise F. Zipkin (2022). Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources. In: Methods in Ecology and Evolution (2022) https://doi.org/10.1111/2041-210X.13811.

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Jeffrey W. Doser, Andrew O. Finley, Aaron S. Weed, Elise F. Zipkin (2021). Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance. In: Methods in Ecology and Evolution (2021) https://doi.org/10.1111/2041-210X.13578.

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Jeffrey W. Doser, Aaron S. Weed, Elise F. Zipkin, Kathryn M. Miller, Andrew O. Finley (2021). Trends in bird abundance differ among protected forests but not bird guilds. In Ecological Applications: https://doi.org/10.1002/eap.2377.

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Mahdi Teimouri, Jeffrey W. Doser, Andrew O. Finley (2020). ForestFit: An R package for modeling plant size distributions. In: Environmental Modelling & Software (2020) https://doi.org/10.1016/j.envsoft.2020.104668.

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Jeffrey W. Doser, Andrew O. Finley, Eric P. Kasten, Stuart H. Gage (2020). Assessing soundscape disturbance through hierarchical models and acoustic indices: A case study on a shelterwood logged northern Michigan forest. In: Ecological Indicators (2020) https://doi.org/10.1016/j.ecolind.2020.106244.

PDF Code Dataset arXiv

Jeffrey W. Doser, Kristina M. Hannam, Andrew O. Finley (2020). Characterizing functional relationships between anthropogenic and biological sounds: A western New York state soundscape case study. In: Landscape Ecology (2020) https://doi.org/10.1007/s10980-020-00973-2.