Articles
Fit occupancy models
- Introduction to spOccupancy
Learn how to get started with the core spOccupancy functionality
- Formatting data for use in spOccupancy
Learn how to format raw data to fit occupancy models in spOccupancy
- Joint species distribution models with imperfect detection in spOccupancy
Learn how to account for species correlations within multi-species occupancy models
- Multi-season occupancy models for assessing species trends and spatio-temporal occurrence patterns (PDF)
- Multi-season occupancy models for assessing species trends and spatio-temporal occurrence patterns
Learn how to fit multi-season occupancy models in spOccupancy
- Fitting occupancy models with random intercepts in spOccupancy
Learn how to include random effects in spOccupancy
- Spatially varying coefficient models in spOccupancy
Learn how to fit spatially varying coefficient models to quantify spatially varying trends and species-environment relationships
- Integrated multi-species occupancy models in spOccupancy
Learn how to fit multi-species occupancy models with multiple data sources
- Exploring model identifiability with a stress-testing framework
Learn how to investigate identifiability in spOccupancy
Guidelines and considerations
- Practical guidelines and considerations when fitting SVC occupancy models
Comments on interpretation and reliability of inferences from SVC occupancy models
- Convergence diagnostics and other considerations when fitting spatial occupancy models
Ideas related to convergence, identifiability, priors, and other potential problem areas in spatial occupancy models